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PlatformLicenseASP member
ClassSpecificCategory
NamePublisher/developer
KeywordsDescription
      
JPrIME 0.3.1
Company: SciLifeLab Stockholm
Country: Sweden, Stockholm, Solna
ASP member: No
Company Web site: http://www.scilifelab.se
Site of program: http://code.google.com/p/jprime/
Application info: http://code.google.com/p/jprime/

Author: Joel Sjöstrand

Sales email: joel.sjostrand@gmail.com
Support email: joel.sjostrand@gmail.com

License type: Freeware
Class: Development::Components & Libraries
Specific:
Categories: Phylogenetics, phylogenomics, MCMC, Bayesian inference
Platform:
OS: Win7 x32, Win7 x64, Windows 8, Linux, Linux Open Source, Mac OS X, Java
System requirements: Java 1.6+
Language: English
Limitations: None

  
Keywords: Phylogenetics, phylogenomics, MCMC, Bayesian inference

JPrIME is a Java library with tools for phylogenetics. It is a complement to the the original C++ library PrIME developed by people in computational biology at KTH and Stockholm University, spearheaded by Jens Lagergren, Lars Arvestad and Bengt Sennblad. Large parts of JPrIME can be attributed to Joel Sjostrand. More recent contributors are Raja Hashim Ali, Owais Mahmud, Ikram Ullah and Auwn Muhammad.

PrIME and JPrIME have an emphasis on probabilistic phylogenetic models that typically employ a Markov-chain Monte Carlo (MCMC) framework.

JPrIME is free software and is available under the New BSD License.
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Archived

DateVersionStatusRelease history
08 Mar 20130.3.1Major UpdateSupport for creating simulated trees.
Distribution permissions: JPrIME is free software available under the New BSD License.

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